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博士生导师

孙艳波
作者: 发布时间:2020-07-20 点击数:


个人信息:

孙艳波,男,研究员,博士生导师。

邮箱:sunyanbo@ynu.edu.cn;biosunyb@163.com

Github:https://github.com/Sun-Yanbo

ResearchGate:https://www.researchgate.net/profile/Yan-Bo-Sun

单位:云南大学bwin88必赢网址。

    入选云南大学高层次引进人才,云南省“杰青”,云南省“万人计划”青年拔尖人才、中青年学术和技术带头人等。主要从事动物的环境适应机制研究,利用进化生态基因组学和生物信息学系统探讨基因型和表型的关系,进而阐明生物适应新/极端环境的遗传和分子机制,以及适应性进化的规律性问题。在本领域杂志(如PNASMol Biol EvolBioinformaticsGenome Biol EvolGenome Research等)发表文章近20篇。曾主持多项国家自然科学基金,云南省科技厅及中国科学院项目。


招生方向:

生态学博士、生态学硕士

有志于进化&生态基因组学方向硕博连读(研究对象不限,可包括脊椎动物和无脊椎动物)的同学或者从事博士后合作研究的,欢迎联系。

 

研究方向

结合基因组学的发展,从基因组水平系统研究生物生态适应的遗传和分子机制。

1)基因组内转座元件在物种适应性进化中的作用

2)生物表型进化的遗传和表观调控机制

3)基因组多样性与生物信息学

 

教育经历:

1)       2007.72012.6,  中国科学院昆明动物研究所遗传学博士, 导师: 张亚平院士

2)       2003.92007.6,  山东大学海洋学院生物科学学士

 

工作经历:

1)       2020.5-至今,云南大学,bwin88必赢网址/生物多样性研究院,研究员

2)       2015.1-2020.4, 中国科学院昆明动物研究所遗传资源与进化国家重点实验室副研究员

3)       2012.7-2014.12,中国科学院昆明动物研究所遗传资源与进化国家重点实验室助理研究员

 

主持项目:

1)       云南省基础研究计划“杰出青年”项目,2021/01-2023/12

2)       云南大学高层次引进人才项目,2020/05-2023/05

3)       国家自然科学基金面上项目,《转座元件介导的表观调控和序列变异在动物低氧适应中的作用》,2019/01-2022/12

4)       国家自然科学基金面上项目,《高原蛙类的紫外应答机制及其抗氧化系统的适应性进化研究》,2017/01-2020/12

5)       国家自然科学基金青年基金,《人脑不同功能区域的转录组复杂度及其调控机制研究》,2014/01-2016/12

6)       中国科学院“西部青年学者A”,《胎生蜥蜴的进化机制解析》,2019/01-2021/12

7)       中国科学院青年创新促进会,2017/01-2020/12

 

代表成果

1) Fu T.T#, Sun Y.B#, Gao W#, Long C, Yang C, Yang X, Zhang Y, Lan X, Huang S, Jin J, Murphy R, Zhang Y*, Lai R*, Hillis D*, Zhang Y.P*, Che J*. 2022 The highest-elevation frog provides insights into mechanisms and evolution of defenses against high ultraviolet radiation. PNAS (In press)

2) Liu YN, Chen RM, Pu QT, Nneji LM, Sun YB*. 2022. Expression Plasticity of Transposable Elements Is Highly Associated with Organismal Re-adaptation to Ancestral Environments. Genome Biology and Evolution 14 evac084.

3) Yan-Bo Sun*, Yi Zhang, Kai Wang. Perspectives on studying molecular adaptations of amphibians in the genomic era. Zoological Research, 2020, 41(4): 351-364.

4) Ma Yun-Fei, A. C. Adeola, Sun Yan-Bo, Xie Hai-Bing and Zhang Ya-Ping CaptureProbe: a java tool for designing probes for capture Hi-C applications. Zoological Research, 2020 41(1) 94-96

5) Chun-Hua Yang, Ting-Ting Fu, Xin-Qiang Lan, Yun Zhang, Lotanna Micah Nneji, Robert W. Murphy, Yan-Bo Sun(共同通讯), Jing Che 2019. Comparative skin histology of frogs reveals high-elevation adaptation of the Tibetan Nanorana parkeri. Asian Herpetological Research 10(2): 7985.

6) Gao, W., Sun, Y.B.(并列第一), Zhou, W.W., Xiong, Z.J., Chen, L., Li, H., Fu, T.T., Xu, K., Xu, W., Ma, L., Chen, Y.J., Xiang, X.Y., Zhou, L., Zeng, T., Zhang, S., Jin, J.Q., Chen, H.M., Zhang, G., Hillis, D.M., Ji, X., Zhang, Y.P., Che, J., 2019. Genomic and transcriptomic investigations of the evolutionary transition from oviparity to viviparity. PNAS 116, 3646-3655.

7) Sun, Y.B., Fu, T.T., Jin, J.Q., Murphy, R.W., Hillis, D.M., Zhang, Y.P., Che, J., 2018. Species groups distributed across elevational gradients reveal convergent and continuous genetic adaptation to high elevations. PNAS 115, E10634-E10641.

8) Sun, Y.B., 2018. FasParser2: a graphical platform for batch manipulation of tremendous amount of sequence data. Bioinformatics 34, 2493-2495.

9) Jin, J.Q., Sun, Y.B.(通讯作者), 2018. AutoSeqMan: batch assembly of contigs for Sanger sequences. Zool Res 39, 123-126.

10) Sun, Y.B., 2017. FasParser: a package for manipulating sequence data. Zool Res 38, 110-112 .

11) Sun, Y.B., Xiong, Z.J., Xiang, X.Y., Liu, S.P., Zhou, W.W., Tu, X.L., Zhong, L., Wang, L., Wu, D.D., Zhang, B.L., Zhu, C.L., Yang, M.M., Chen, H.M., Li, F., Zhou, L., Feng, S.H., Huang, C., Zhang, G.J., Irwin, D., Hillis, D.M., Murphy, R.W., Yang, H.M., Che, J., Wang, J., Zhang, Y.P., 2015. Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes. PNAS 112, E1257-1262.

12) Song, B., Cheng, S., Sun, Y.B., Zhong, X., Jin, J., Guan, R., Murphy, R.W., Che, J., Zhang, Y., Liu, X., 2015. A genome draft of the legless anguid lizard, Ophisaurus gracilis. Gigascience 4, 17.

13) Wu, D.D., Ye, L.Q., Li, Y., Sun, Y.B., Shao, Y., Chen, C., Zhu, Z., Zhong, L., Wang, L., Irwin, D.M., Zhang, Y.E., Zhang, Y.P., 2015. Integrative analyses of RNA editing, alternative splicing, and expression of young genes in human brain transcriptome by deep RNA sequencing. Journal of molecular cell biology 7, 314-325.

14) Cao, X., Sun, Y.B., Irwin, D.M., Wang, G.D., Zhang, Y.P., 2015. Nocturnal to diurnal transition in the common ancestor of haplorrhines: evidence from genomic-scan for positively selected genes. Journal of genetics and genomics 42, 33-37.

15) Sun, Y.B., Zhou, W.P., Liu, H.Q., Irwin, D.M., Shen, Y.Y., Zhang, Y.P., 2013. Genome-wide scans for candidate genes involved in the aquatic adaptation of dolphins. Genome biology and evolution 5, 130-139.

16) Liu, J., Wang, L.D., Sun, Y.B.(并列第一), Li, E.M., Xu, L.Y., Zhang, Y.P., Yao, Y.G., Kong, Q.P., 2012. Deciphering the signature of selective constraints on cancerous mitochondrial genome. Molecular biology and evolution 29, 1255-1261.

17) Sun, Y.B., Shen, Y.Y., Irwin, D.M., Zhang, Y.P., 2011. Evaluating the roles of energetic functional constraints on teleost mitochondrial-encoded protein evolution. Molecular biology and evolution 28, 39-44.

18) Shen, Y.Y., Liang, L., Sun, Y.B., Yue, B.S., Yang, X.J., Murphy, R.W., Zhang, Y.P., 2010. A mitogenomic perspective on the ancient, rapid radiation in the Galliformes with an emphasis on the Phasianidae. BMC evolutionary biology 10, 132.

19) Shen, Y.Y., Shi, P., Sun, Y.B., Zhang, Y.P., 2009. Relaxation of selective constraints on avian mitochondrial DNA following the degeneration of flight ability. Genome research 19, 1760-1765.



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